species:   Bodot
pid:       PID1102
parent:    Bd-milR51
paralog:   
locus:     MU009151.1:1869994-1870222
matures:   ['UGGAUUUGAGGACAUGGCUGGA', 'CAGCGACUUCAGGCCAGA']
srr:       SRR8374850
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram MU009151.1:1869994-1870222

2 out of bounds
6 alignments
5 proper strand
5 stranded perfect matches

                                                                                                                                                           ***********************        **********************                     
CUCUCGGACGGCUUGGUGUCGUCCUUCUUCUCCGCCGCAGCGGGGGGGUGGGCAUGCGCCGUGUCUUGGACCUGCUUGAUUCCCGCGAGCAUGUUGACACGACCGUUGAUCGCGUCAACCUGCGAUGAGAGCUGGGCGUUGUCCUGCUGCAGCGACUUCAGGCCAGACAGAAUCUCGCCCAACAGGGCAGAGACGUCUGGAUUUGAGGACAUGGCUGGAGAUUGCGAGA
.(((((((((((.....)))))))..(((((((((....))))))))).(((((.((((((((((...(((.((((((.......)))))).))))))))...(.((.((((((......)))))).)).)...))))))))))..((.((((.((((((((((((((....((((((((....)))).)))).)))))).)))))))...).)))).)).....))))
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGGAUUUGAGGACAUGGCUGGA---------- l=22 a=0 c
-----------------------------------------------------------------------------------------------------------------------------------------------------CAGCGACUUCAGGCCAGA-------------------------------------------------------------- l=18 a=0 c*
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGACGUCUGGAUUUGAGG--------------------- l=20 a=1 ma
-------------------------------------------------------------------------------------------------------------------------------------------------------------UCAGGCCAGACAGAAUCUCGC--------------------------------------------------- l=21 a=0 ma*

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGACGUCUGGAUUUGAGG--------------------- l=20 a=1 (ma)
------------------------------------------------------------------------------------------------------------------------------------UGGGCGUUGUCCUGCUGCAGC---------------------------------------------------------------------------- l=21 a=1 
------------------------------------------------------------------------------------------------------------------------UGCGAUGAGAGCUGGGCGUU----------------------------------------------------------------------------------------- l=20 a=1 
-----------------------------------------------------------------------------------CGCGAGCAUGUUGACACGAC------------------------------------------------------------------------------------------------------------------------------ l=20 a=1 
--------------------------------------------------GGCAUGCGCCGUGUCUUGGACCUG----------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 

mb-01011
ax-1011011
ku-01
ss-110111111100
fn-011
